Publication records
Pierre Denelle
2026-03-31
Source:vignettes/web_only/Publication_records.Rmd
Publication_records.Rmd
This vignette contains a list of publications that cite or use the
GIFT R package, as of March 2026. It may be useful if you
are looking for case studies or examples of specific functionality.
Peer-reviewed research articles
2026
36. Enquist, B. J., Boyle, B., Maitner, B. S., Merow, C., Carlson, B. S., Feng, X., Moulatlet, G. M., Newman, E. A., Park, D. S., Pillet, M., Roehrdanz, P. R., Serra-Diaz, J. M., Babu, R. S. Y., Barbosa, G. G. C., Casler, N., Donoghue, J. C.II, Guaderrama, D., Sajja, R. K., Couvreur, T. L. P., … Wiser, S. K. (2026). BIEN: A biodiversity informatics ecosystem advancing open and reproducible workflows for plant observation, plot and trait data. Methods in Ecology and Evolution, 00, 1–29. https://doi.org/10.1111/2041-210x.70274
35. Hurtado-Materon MA, Siciliano-Martina L, Short RA, McGuire JL, Lawing AM. commecometrics: an R package for trait-environment modelling at the community level. Biodivers Data J. (2026) https://doi.org/10.3897/BDJ.13.e168221
34. Wieczorkowski, J. D., L. R.Rajaovelona, J.Hermans, et al. Orchids in the Open: Understanding Biodiversity Beyond Madagascar’s Forests. Diversity and Distributions (2026) https://doi.org/10.1111/ddi.70172
33. Mesaglio, T., Wenk, E., Sauquet, H. and Cornwell, W.K., Long unobserved and recently discovered: towards a better understanding of protected-area species dynamics using curated species lists. Ecography (2026). https://doi.org/10.1002/ecog.08294
32. Appeltauer, S., M.Knöppler, M.Teschauer, J.Kollmann, and M.Bauer. The Restoration Debt Remains: Topsoil Removal and Different Mowing Regimes Reach Desired States of Calcareous Grassland but Do Not Match the Reference. Applied Vegetation Science. (2026). https://doi.org/10.1111/avsc.70067
31. Huang, C., Chen, H.Y.H., Wenda, C. et al. Meta-analysis shows that plant mixtures reduce pathogens and invertebrate herbivores and increase plant productivity. Nat Commun (2026). https://doi.org/10.1038/s41467-026-70609-7
30. Santi, F., Schrader, J., Testolin, R., Di Musciano, M., Argagnon, O., Attorre, F., Axmanová, I., Bombardi, F., Bonari, G., Bruzzaniti, V., Campos, J.A., Foufopoulos, J., Garbolino, E., Guarino, R., Güler, B., Jiménez-Alfaro, B., Klepka, L., Kreft, H., Lussu, M., Marcenò, C., Médail, F., Panitsa, M., Pasta, S., Prandelli, S., Santovito, D., Škvorc, Ž., Tordoni, E., Vassilev, K., Volz, M., Zannini, P. and Chiarucci, A. (2026), Plant diversity estimates of Mediterranean islands differ among biodiversity databases. Ecography e08128. https://doi.org/10.1002/ecog.08128
29. Li, H., Carmona, C.P., Niu, S. et al. The overlooked role of root water content in the root economics space. Nat. Plants 12, 532–541 (2026). https://doi.org/10.1038/s41477-026-02232-9
28. Thompson, J.B., Martinez, C., Avaria-Llautureo, J. et al. CactEcoDB: Trait, spatial, environmental, phylogenetic and diversification data for the cactus family. Sci Data (2026). https://doi.org/10.1038/s41597-026-06936-7
27. Pouteau, R., Adrien, E., Ah-Peng, C., Albert, S., Flores, O., Laforgue, B., Lavergne, C., Meyer, J.Y., Regen, A., Rojat, M. & Roussel, S. Trait-dependent declines of threatened endemic trees following plant invasion on a tropical oceanic island Biological Conservation (2026) https://doi.org/10.1016/j.biocon.2025.111665
2025
26. Dugerdil, L., Peyron, O., Ménot, G., Egamberdieva, D., Alimov, J., Leroy, S., Garnier, E., Nowak, A. & Joannin, S. First paleoenvironmental calibrations for modern pollen rain of Tajikistan and Uzbekistan: A case study of pollen - vegetation functional biogeography of Arid Central Asia. Global and Planetary Change (2025). https://doi.org/10.1016/j.gloplacha.2025.104857
25. Quan, Y., Hederström, V., Ekroos, J., Menubarbe, P., Krausl, T. & Clough, Y. Landscape composition influences invertebrate herbivory on flowering forbs in semi-natural grasslands Basic and Applied Ecology (2025). https://doi.org/10.1016/j.baae.2025.03.006
24. Fan, Sy., Fristoe, T.S., Li, Sp. et al. Ecological similarities and dissimilarities between donor and recipient regions shape global plant naturalizations. Nat Commun 16, 10485 (2025). https://doi.org/10.1038/s41467-025-65455-y
23. Soledad Martinez, E., Tejada-Gutiérrez, E., Sorribas, A., Mateo-Fornes, J., Solsona, F., Defacio, R. & Alves, R. Multimodal data integration to model, predict, and understand changes in plant biodiversity: a systematic review. Ecological Informatics. (2025) https://doi.org/10.1016/j.ecoinf.2025.103485
22. Grenié, M., Bruelheide, H., Dawson, W., Essl, F., van Kleunen,
M., Kühn, I., Kreft, H., Pyšek, P., Weigelt, P. & Winter, M. (2025)
Gaps in Global Alien Plant Trait Data and How to Fill Them. Global
Ecology and Biogeography
https://doi.org/10.1111/geb.70131
21. Liu, R., van Kleunen, M., Pierce, S., Chytrý, M., Guo, P., Pyšek,
P. & Guo, W. (2025) Grime’s CSR theory revisited: A whole-plant view
of vascular plant functioning across contrasting environments.
Journal of Ecology
https://doi.org/10.1111/1365-2745.70146
20. Siddiqui, S. (2025) Global patterns and drivers of species and
genera richness of Fabaceae. Frontiers in Plant Sciences
https://doi.org/10.3389/fpls.2025.1581814
19. Domazetoski, V., Kreft, H., Bestova, H., Wieder, P., Koynov, R.,
Zarei, A., & Weigelt, P. (2025) Using large language models to
extract plant functional traits from unstructured text. Applications
in Plant Sciences
https://doi.org/10.1002/aps3.70011
18. Mesaglio, T., Kar, F., Sauquet, H., & Cornwell, W.K. (2025)
infinitylists: A Shiny application and R package for rapid
generation of place-based species checklists. Applications in Plant
Sciences.
https://doi.org/10.1002/aps3.70012
17. Coleman, D., Westoby, M., & Schrader, J. (2025) Island Plant
Species Distributions Contracted at the Cooler Edge Compared to
Mainland. Ecology Letters.
https://doi.org/10.1111/ele.70099
16. Quan, Y., Hederström, V., Ekroos, J., Menubarbe, P., Krausl, T.,
& Clough, Y. (2025) Landscape composition influences invertebrate
herbivory on flowering forbs in semi-natural grasslands. Basic and
Applied Ecology.
https://doi.org/10.1016/j.baae.2025.03.006
15. Guerrero, P., Contador, T., Díaz, A., Escobar, C., Orlando, J.,
Marín, C., & Medina, P. (2025) Southern Islands Vascular Flora
(SIVFLORA) dataset: A global plant database from Southern Ocean islands.
Scientific Data.
https://doi.org/10.1038/s41597-025-04702-9
14. Wunderlich, R.F., Jamoneau, A., Boutry, S., Hosni, M., &
Bertrin, V.. (2025) Model-based management of macrophytes in shallow
lakes under warming. Journal of Environmental Management.
https://doi.org/10.1016/j.jenvman.2025.124543
13. Dugerdil, L., Peyron, O., Violle, C., Joannin, S., Ménot, G.,
Denelle, P., Bruelheide, H., Chytrý, M., Field, R., Hatim, M. Z.,
Gholizadeh, H., Dolezal, J., Pillar, V. D., Shaltout, K. H., Schrodt,
F., & Garnier, E. (2025) Functional Signatures of Surface Pollen and
Vegetation Are Broadly Similar: Good News for Past Reconstructions of
Vegetation. Journal of Biogeography.
https://doi.org/10.1111/jbi.15100
12. Frisk, C., & Hanslin, M. (2025) Optimizing plant species
composition of green roofs for ecological functionality and biodiversity
conservation. Urban Ecosystems.
https://doi.org/10.1007/s11252-024-01657-4
2024
11. Cai, L., Kreft, H., Denelle, H., Taylor, A., Craven, D., Dawson,
W., Essl, F., van Kleunen, M., Pergl, J., Pyšek, P., Winter, M.,
Cabezas, F., Wagner, V., Pelser, P., Wieringa, J. & Weigelt, P.
(2024) Environmental filtering, not dispersal history, explains global
patterns of phylogenetic turnover in seed plants at deep evolutionary
timescales. Nature in Ecology and Evolution.
https://doi.org/10.1038/s41559-024-02599-y
10. Barrasso, C., Krüger, R., Eltner, A., Cord, A. (2024) Mapping
indicator species of segetal flora for result-based payments in arable
land using UAV imagery and deep learning. Ecological
Indicators.
https://doi.org/10.1016/j.ecolind.2024.112780
9. Schrader, J., Weigelt, P., Cai, L., Westoby, M.,
Fernández-Palacios, J.-M., Cabezas, F., Plunkett, G., Ranker, T.,
Triantis, K., Trigas, P., Kubota, Y. & Kreft, H. (2024) Islands are
key for protecting the world’s plant endemism. Nature.
https://doi.org/10.1038/s41586-024-08036-1
8. Aros-Mualin, D. Kessler, M. Untangling poikilohydry and
desiccation tolerance: evolutionary and macroecological drivers in
ferns. Annals of Botany mcae167.
https://doi.org/10.1093/aob/mcae167
7. Chumová, Z., Havlíčková, E., Zeisek, V., Šemberová, K., Mandáková,
T., Euston-Brown, D. and Trávníček, P. (2024), Deciphering Pteronia’s
evolution in the Cape Floristic Region: A comprehensive study disputes
polyploid deficiency and affirms diploid radiation. Plant J,
119: 2236-2254.
https://doi.org/10.1111/tpj.16914
6. Avery L. Russell, Stephen L. Buchmann, John S. Ascher, Zhiheng
Wang, Ricardo Kriebel, Diana D. Jolles, Michael C. Orr, Alice C. Hughes,
Global patterns and drivers of buzzing bees and poricidal plants,
Current Biology, Volume 34, Issue 14, 2024, Pages 3055-3063.e5,
ISSN 0960-9822
https://doi.org/10.1016/j.cub.2024.05.065
5. Delavaux, C.S., Crowther, T.W., Bever, J.D., Weigelt, P., &
Gora, E. Mutualisms weaken the latitudinal diversity gradient among
oceanic islands. Nature 627, 335–339 (2024).
https://doi.org/10.1038/s41586-024-07110-y
4. Roeble, L., van Benthem, K.J., Weigelt, P., Kreft, H., Knope,
M., Mandel, J., Vargas, P., Etienne, R., & Valente, L. Island
biogeography of the megadiverse plant family Asteraceae. Nat
Commun 15, 7276 (2024).
https://doi.org/10.1038/s41467-024-51556-7
3. Fan, Sy., Yang, Q., Li, Sp., Fristoe, T., Cadotte, M.W., Essl, F.,
Kreft, H., Pergl, J., Pyšek, P., Weigelt, P., Kartesz, J., Nishino, M.,
Wieringa, J., & van Kleunen, M. A latitudinal gradient in Darwin’s
naturalization conundrum at the global scale for flowering plants.
Nat Commun 14, 6244 (2023).
https://doi.org/10.1038/s41467-023-41607-w
2. Eva Benavides Rios, Jonathan Sadler, Laura Graham, Thomas J.
Matthews, Species distribution models and island biogeography:
Challenges and prospects, Global Ecology and Conservation,
Volume 51, (2024), e02943, ISSN 2351-9894
https://doi.org/10.1016/j.gecco.2024.e02943
2023
1. Cai, Lirong, Holger Kreft, Amanda Taylor, Julian Schrader, Wayne
Dawson, Franz Essl, Mark van Kleunen, Jan Pergl, Petr Pyšek, and Marten
Winter. “Climatic Stability and Geological History Shape Global Centers
of Neo-and Paleoendemism in Seed Plants.” Proceedings of the
National Academy of Sciences 120, no. 30 (2023): e2300981120.
https://doi.org/10.1073/pnas.2300981120
Preprint
1. Mellado-Mansilla, D., Weigand, A., Weigelt, P., Kreft, H., &
Kessler, M.(2025) Paleogene mass extinction and ongoing Neogene
recolonization shape the tropical African flora. bioRxiv.
https://doi.org/10.1101/2025.04.01.646671